This dataset contains DNA sequence alignments and BEAST XMLs required to replicate phylogenetic analyses in Bujalska et al.
File: Bujalskaetal_dataset1_cricetinae_mitogenomes.fa
Description: Alignment of mitochondrial genome sequences of Cricetinae species obtained in this study and downloaded from NCBI.
File: Bujalskaetal_dataset2_Csungorus_mtDNA.fa
Description: Alignment of an mtDNA fragment from modern and ancient Cricetiscus sungorus samples, obtained in this study and downloaded from NCBI. The fragment includes cytochrome b, control region, tRNA-Thr, and tRNA-Pro.
File: Bujalskaetal_dataset2_BEAST.xml
Description: BEAST XML file generated using BEAUti, used to infer the phylogeny based on the Bujalskaetal_dataset2_Csungorus_mtDNA.fa alignment (shown in Figure 2).
File: Bujalskaetal_dataset3_Nmigratorius_mtDNA.fa
Description: Alignment of mtDNA cytochrome b sequences from modern and ancient Nothocricetulus migratorius samples, obtained in this study and downloaded from NCBI.
File: Bujalskaetal_dataset3_BEAST.xml
Description: BEAST XML file generated using BEAUti, used to infer the phylogeny based on the Bujalskaetal_dataset3_Nmigratorius_mtDNA.fa alignment (shown in Figure 3).
Code/software
The FASTA alignment files can be viewed and edited using a text editor or a DNA alignment editor such as AliView ([https://github.com/AliView/AliView)
XML files can be viewed and edited using a text editor. The phylogenies were inferred using BEAST v1.10.5 (https://beast.community/).
