ChIP-seq results and analysis pipeline for CaRtg1 in C. albicans -- a study on retrograde pathway in mitochondrial dysfunctions

Results and data analysis pipeline for ChIP-seq experiments involving CaRtg1 protein in Candida albicans, intended to elucidate the function of the retrograde pathway in mitochondrial dysfunctions. Experiments were conducted on three strains:

• WT C. albicans (BWP17)
• ΔCaaep3
• ΔCappr13

All experiments were conducted in three biological replicates.

Files included:

• analysis_pipeline.zip -- scripts along with reference and annotation files used in the analysis,
• results.zip -- result files, including MACS2 and ChIPseeker outputs, batch correction results, and inputs used in data enrichment analysis.

Each archive contains a README.txt with detailed descriptions of included files.